PoplarV1, Main, Exploration, bibRecord, 002A16

Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation.

Identifieur interne : 002A16 ( Main/Exploration ); précédent : 002A15; suivant : 002A17

Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation.

Auteurs : D. Lopez [France] ; G. Bronner ; N. Brunel ; D. Auguin ; S. Bourgerie ; F. Brignolas ; S. Carpin ; C. Tournaire-Roux ; C. Maurel ; B. Fumanal ; F. Martin ; S. Sakr ; P. Label ; J L Julien ; A. Gousset-Dupont ; J S Venisse

Source :

Journal of experimental botany [ 1460-2431 ] ; 2012.

RBID : pubmed:22223812

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Animals (MeSH), Aquaporins (classification), Aquaporins (genetics), Aquaporins (metabolism), Biological Transport (MeSH), Droughts (MeSH), Environment (MeSH), Evolution, Molecular (MeSH), Gene Expression Regulation, Plant (physiology), Magnoliopsida (genetics), Magnoliopsida (metabolism), Magnoliopsida (physiology), Molecular Sequence Data (MeSH), Multigene Family (MeSH), Organ Specificity (MeSH), Phylogeny (MeSH), Plant Leaves (genetics), Plant Leaves (metabolism), Plant Leaves (physiology), Plant Proteins (classification), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Roots (genetics), Plant Roots (metabolism), Plant Roots (physiology), Plant Stems (genetics), Plant Stems (metabolism), Plant Stems (physiology), Polymorphism, Genetic (genetics), Populus (genetics), Populus (metabolism), Populus (physiology), Protein Isoforms (MeSH), Sequence Alignment (MeSH), Water (metabolism), Wood (genetics), Wood (metabolism), Wood (physiology), Xenopus laevis (genetics), Xenopus laevis (metabolism).
MESH :
- chemical , classification : Aquaporins, Plant Proteins.
- chemical , genetics : Aquaporins, Plant Proteins.
- chemical , metabolism : Aquaporins, Plant Proteins, Water.
- genetics : Magnoliopsida, Plant Leaves, Plant Roots, Plant Stems, Polymorphism, Genetic, Populus, Wood, Xenopus laevis.
- metabolism : Magnoliopsida, Plant Leaves, Plant Roots, Plant Stems, Populus, Wood, Xenopus laevis.
- physiology : Gene Expression Regulation, Plant, Magnoliopsida, Plant Leaves, Plant Roots, Plant Stems, Populus, Wood.
- Amino Acid Sequence, Animals, Biological Transport, Droughts, Environment, Evolution, Molecular, Molecular Sequence Data, Multigene Family, Organ Specificity, Phylogeny, Protein Isoforms, Sequence Alignment.

Abstract

A novel category of major intrinsic proteins which share weak similarities with previously identified aquaporin subfamilies was recently identified in land plants, and named X (for unrecognized) intrinsic proteins (XIPs). Because XIPs are still ranked as uncharacterized proteins, their further molecular characterization is required. Herein, a systematic fine-scale analysis of XIP sequences found in flowering plant databases revealed that XIPs are found in at least five groups. The phylogenetic relationship of these five groups with the phylogenetic organization of angiosperms revealed an original pattern of evolution for the XIP subfamily through distinct angiosperm taxon-specific clades. Of all flowering plant having XIPs, the genus Populus encompasses the broadest panel and the highest polymorphism of XIP isoforms, with nine PtXIP sequences distributed within three XIP groups. Comprehensive PtXIP gene expression patterns showed that only two isoforms (PtXIP2;1 and PtXIP3;2) were transcribed in vegetative tissues. However, their patterns are contrasted, PtXIP2;1 was ubiquitously accumulated whereas PtXIP3;2 was predominantly detected in wood and to a lesser extent in roots. Furthermore, only PtXIP2;1 exhibited a differential expression in leaves and stems of drought-, salicylic acid-, or wounding-challenged plants. Unexpectedly, the PtXIPs displayed different abilities to alter water transport upon expression in Xenopus laevis oocytes. PtXIP2;1 and PtXIP3;3 transported water while other PtXIPs did not.

DOI: 10.1093/jxb/err404
PubMed: 22223812

Affiliations:

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<author><name sortKey="Bourgerie, S" sort="Bourgerie, S" uniqKey="Bourgerie S" first="S" last="Bourgerie">S. Bourgerie</name>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Animals (MeSH)</term>
<term>Aquaporins (classification)</term>
<term>Aquaporins (genetics)</term>
<term>Aquaporins (metabolism)</term>
<term>Biological Transport (MeSH)</term>
<term>Droughts (MeSH)</term>
<term>Environment (MeSH)</term>
<term>Evolution, Molecular (MeSH)</term>
<term>Gene Expression Regulation, Plant (physiology)</term>
<term>Magnoliopsida (genetics)</term>
<term>Magnoliopsida (metabolism)</term>
<term>Magnoliopsida (physiology)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Multigene Family (MeSH)</term>
<term>Organ Specificity (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Leaves (genetics)</term>
<term>Plant Leaves (metabolism)</term>
<term>Plant Leaves (physiology)</term>
<term>Plant Proteins (classification)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plant Roots (genetics)</term>
<term>Plant Roots (metabolism)</term>
<term>Plant Roots (physiology)</term>
<term>Plant Stems (genetics)</term>
<term>Plant Stems (metabolism)</term>
<term>Plant Stems (physiology)</term>
<term>Polymorphism, Genetic (genetics)</term>
<term>Populus (genetics)</term>
<term>Populus (metabolism)</term>
<term>Populus (physiology)</term>
<term>Protein Isoforms (MeSH)</term>
<term>Sequence Alignment (MeSH)</term>
<term>Water (metabolism)</term>
<term>Wood (genetics)</term>
<term>Wood (metabolism)</term>
<term>Wood (physiology)</term>
<term>Xenopus laevis (genetics)</term>
<term>Xenopus laevis (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences (MeSH)</term>
<term>Animaux (MeSH)</term>
<term>Aquaporines (classification)</term>
<term>Aquaporines (génétique)</term>
<term>Aquaporines (métabolisme)</term>
<term>Bois (génétique)</term>
<term>Bois (métabolisme)</term>
<term>Bois (physiologie)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Eau (métabolisme)</term>
<term>Environnement (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Feuilles de plante (génétique)</term>
<term>Feuilles de plante (métabolisme)</term>
<term>Feuilles de plante (physiologie)</term>
<term>Isoformes de protéines (MeSH)</term>
<term>Magnoliopsida (génétique)</term>
<term>Magnoliopsida (métabolisme)</term>
<term>Magnoliopsida (physiologie)</term>
<term>Phylogenèse (MeSH)</term>
<term>Polymorphisme génétique (génétique)</term>
<term>Populus (génétique)</term>
<term>Populus (métabolisme)</term>
<term>Populus (physiologie)</term>
<term>Protéines végétales (classification)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Racines de plante (génétique)</term>
<term>Racines de plante (métabolisme)</term>
<term>Racines de plante (physiologie)</term>
<term>Régulation de l'expression des gènes végétaux (physiologie)</term>
<term>Spécificité d'organe (MeSH)</term>
<term>Sécheresses (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Tiges de plante (génétique)</term>
<term>Tiges de plante (métabolisme)</term>
<term>Tiges de plante (physiologie)</term>
<term>Transport biologique (MeSH)</term>
<term>Xenopus laevis (génétique)</term>
<term>Xenopus laevis (métabolisme)</term>
<term>Évolution moléculaire (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Aquaporins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Aquaporins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Aquaporins</term>
<term>Plant Proteins</term>
<term>Water</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Aquaporines</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Magnoliopsida</term>
<term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Plant Stems</term>
<term>Polymorphism, Genetic</term>
<term>Populus</term>
<term>Wood</term>
<term>Xenopus laevis</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Aquaporines</term>
<term>Bois</term>
<term>Feuilles de plante</term>
<term>Magnoliopsida</term>
<term>Polymorphisme génétique</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Racines de plante</term>
<term>Tiges de plante</term>
<term>Xenopus laevis</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Magnoliopsida</term>
<term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Plant Stems</term>
<term>Populus</term>
<term>Wood</term>
<term>Xenopus laevis</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Aquaporines</term>
<term>Bois</term>
<term>Eau</term>
<term>Feuilles de plante</term>
<term>Magnoliopsida</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Racines de plante</term>
<term>Tiges de plante</term>
<term>Xenopus laevis</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Bois</term>
<term>Feuilles de plante</term>
<term>Magnoliopsida</term>
<term>Populus</term>
<term>Racines de plante</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Tiges de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Gene Expression Regulation, Plant</term>
<term>Magnoliopsida</term>
<term>Plant Leaves</term>
<term>Plant Roots</term>
<term>Plant Stems</term>
<term>Populus</term>
<term>Wood</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Animals</term>
<term>Biological Transport</term>
<term>Droughts</term>
<term>Environment</term>
<term>Evolution, Molecular</term>
<term>Molecular Sequence Data</term>
<term>Multigene Family</term>
<term>Organ Specificity</term>
<term>Phylogeny</term>
<term>Protein Isoforms</term>
<term>Sequence Alignment</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term>
<term>Animaux</term>
<term>Données de séquences moléculaires</term>
<term>Environnement</term>
<term>Famille multigénique</term>
<term>Isoformes de protéines</term>
<term>Phylogenèse</term>
<term>Spécificité d'organe</term>
<term>Sécheresses</term>
<term>Séquence d'acides aminés</term>
<term>Transport biologique</term>
<term>Évolution moléculaire</term>
</keywords>
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<front><div type="abstract" xml:lang="en">A novel category of major intrinsic proteins which share weak similarities with previously identified aquaporin subfamilies was recently identified in land plants, and named X (for unrecognized) intrinsic proteins (XIPs). Because XIPs are still ranked as uncharacterized proteins, their further molecular characterization is required. Herein, a systematic fine-scale analysis of XIP sequences found in flowering plant databases revealed that XIPs are found in at least five groups. The phylogenetic relationship of these five groups with the phylogenetic organization of angiosperms revealed an original pattern of evolution for the XIP subfamily through distinct angiosperm taxon-specific clades. Of all flowering plant having XIPs, the genus Populus encompasses the broadest panel and the highest polymorphism of XIP isoforms, with nine PtXIP sequences distributed within three XIP groups. Comprehensive PtXIP gene expression patterns showed that only two isoforms (PtXIP2;1 and PtXIP3;2) were transcribed in vegetative tissues. However, their patterns are contrasted, PtXIP2;1 was ubiquitously accumulated whereas PtXIP3;2 was predominantly detected in wood and to a lesser extent in roots. Furthermore, only PtXIP2;1 exhibited a differential expression in leaves and stems of drought-, salicylic acid-, or wounding-challenged plants. Unexpectedly, the PtXIPs displayed different abilities to alter water transport upon expression in Xenopus laevis oocytes. PtXIP2;1 and PtXIP3;3 transported water while other PtXIPs did not.</div>
</front>
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<DateCompleted><Year>2014</Year>
<Month>06</Month>
<Day>04</Day>
</DateCompleted>
<DateRevised><Year>2017</Year>
<Month>11</Month>
<Day>16</Day>
</DateRevised>
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<Issue>5</Issue>
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<Month>Mar</Month>
</PubDate>
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<Title>Journal of experimental botany</Title>
<ISOAbbreviation>J Exp Bot</ISOAbbreviation>
</Journal>
<ArticleTitle>Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation.</ArticleTitle>
<Pagination><MedlinePgn>2217-30</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1093/jxb/err404</ELocationID>
<Abstract><AbstractText>A novel category of major intrinsic proteins which share weak similarities with previously identified aquaporin subfamilies was recently identified in land plants, and named X (for unrecognized) intrinsic proteins (XIPs). Because XIPs are still ranked as uncharacterized proteins, their further molecular characterization is required. Herein, a systematic fine-scale analysis of XIP sequences found in flowering plant databases revealed that XIPs are found in at least five groups. The phylogenetic relationship of these five groups with the phylogenetic organization of angiosperms revealed an original pattern of evolution for the XIP subfamily through distinct angiosperm taxon-specific clades. Of all flowering plant having XIPs, the genus Populus encompasses the broadest panel and the highest polymorphism of XIP isoforms, with nine PtXIP sequences distributed within three XIP groups. Comprehensive PtXIP gene expression patterns showed that only two isoforms (PtXIP2;1 and PtXIP3;2) were transcribed in vegetative tissues. However, their patterns are contrasted, PtXIP2;1 was ubiquitously accumulated whereas PtXIP3;2 was predominantly detected in wood and to a lesser extent in roots. Furthermore, only PtXIP2;1 exhibited a differential expression in leaves and stems of drought-, salicylic acid-, or wounding-challenged plants. Unexpectedly, the PtXIPs displayed different abilities to alter water transport upon expression in Xenopus laevis oocytes. PtXIP2;1 and PtXIP3;3 transported water while other PtXIPs did not.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lopez</LastName>
<ForeName>D</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Université Blaise Pascal UMRA 547 PIAF, Clermont-Ferrand, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Bronner</LastName>
<ForeName>G</ForeName>
<Initials>G</Initials>
</Author>
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<ForeName>N</ForeName>
<Initials>N</Initials>
</Author>
<Author ValidYN="Y"><LastName>Auguin</LastName>
<ForeName>D</ForeName>
<Initials>D</Initials>
</Author>
<Author ValidYN="Y"><LastName>Bourgerie</LastName>
<ForeName>S</ForeName>
<Initials>S</Initials>
</Author>
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<ForeName>F</ForeName>
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<ForeName>S</ForeName>
<Initials>S</Initials>
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<ForeName>C</ForeName>
<Initials>C</Initials>
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<Author ValidYN="Y"><LastName>Maurel</LastName>
<ForeName>C</ForeName>
<Initials>C</Initials>
</Author>
<Author ValidYN="Y"><LastName>Fumanal</LastName>
<ForeName>B</ForeName>
<Initials>B</Initials>
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<Author ValidYN="Y"><LastName>Martin</LastName>
<ForeName>F</ForeName>
<Initials>F</Initials>
</Author>
<Author ValidYN="Y"><LastName>Sakr</LastName>
<ForeName>S</ForeName>
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<Author ValidYN="Y"><LastName>Label</LastName>
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<ForeName>A</ForeName>
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<Author ValidYN="Y"><LastName>Venisse</LastName>
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<Language>eng</Language>
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<ArticleDate DateType="Electronic"><Year>2012</Year>
<Month>01</Month>
<Day>05</Day>
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</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>J Exp Bot</MedlineTA>
<NlmUniqueID>9882906</NlmUniqueID>
<ISSNLinking>0022-0957</ISSNLinking>
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<MeshHeading><DescriptorName UI="D020033" MajorTopicYN="N">Protein Isoforms</DescriptorName>
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<MeshHeading><DescriptorName UI="D014982" MajorTopicYN="N">Xenopus laevis</DescriptorName>
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<region><li>Auvergne (région administrative)</li>
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Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation.

Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation.

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